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ABOUT THIS RECORD

ID: MNEST051351
species: Populus tremula x Populus tremuloides
source: PMRD, original name: ppl-miR319

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGACTGAAGGGAGCTCCT

miRNA*
 AGAGCTTCCTTCAGCCCACTC

mismatches: 2
bulges: 1
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pre-miRNA
 AATGGTGGGAGAGAGCTTCCTTCAGCCCACTCATGGATAGGAGAAAGGGATTGAATTAGCTGCCGACTCATTCATTCAAGCACTAGTAGAAAAAAGTGGA
ATGGATATTCTTTTGCTACTGTGATTGTGTGAATGATGCGGGAGATAGTTTTACATCCCCTCTTTTTCTGTGCTTGGACTGAAGGGAGCTCCTTCCTTCT
ATTG

dot-bracket secondary structure
(((((.(((((.(((((((((((((.(((..((((((.(((((...(((((.((((((.((.(((..((((((((.(((.(((.(((((...(((..(((
((....)))))))).)))))))).))).))))))))..))).)).))))))...))))))))))..))))))..))).))))))))))))))))))..))
))).


SIMILARITIES
miRBase ptc-MIR319f: 3e-98

PMRD ptc-miR319f: 3e-98

microPC miR319: 2e-19		UniProt no hits

RFAM MIR159: 4e-98

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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