ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
source: PMRD, original name: ppl-miR399b
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTTCCCT miRNA* GGCACCTCTCTTCCTTGGCAGA mismatches: 3 bulges: 2 |
pre-miRNA
AAACCAGTTGCAGGGCACCTCTCTTCCTTGGCAGACAGTACTAATGGTGCCTATAGCTTCAAGCTGAGAGGGTATGCGAGAATCTTGATCCCAATATAGG
CTTGCCAAAGGAGAGTTTCCCTGTGACCGTTT
dot-bracket secondary structure
((((..((..(((((...(((((((..((((((..((.......))..(((((((((.....)).....(((....((((...))))..)))..))))))
).)))))))))))))...)))))..)).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
AAACCAGTTGCAGGGCACCTCTCTTCCTTGGCAGACAGTACTAATGGTGCCTATAGCTTCAAGCTGAGAGGGTATGCGAGAATCTTGATCCCAATATAGG
CTTGCCAAAGGAGAGTTTCCCTGTGACCGTTT
dot-bracket secondary structure
((((..((..(((((...(((((((..((((((..((.......))..(((((((((.....)).....(((....((((...))))..)))..))))))
).)))))))))))))...)))))..)).))))
SIMILARITIES| miRBase ptc-MIR399h: 6e-71 PMRD ptc-miR399h: 6e-71 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miR399h from PMRD (MNEST051754) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
