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ABOUT THIS RECORD
ID:
MNEST051352
species:
Populus tremula x Populus tremuloides
source:
PMRD, original name:
ppl-miR399b
Taxonomy by NCBI:
Populus tremula x Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGTTTCCCT
miRNA*
GGCACCTCTCTTCCTTGGCAGA
mismatches:
3
bulges:
2
View larger
pre-miRNA
AAACCAGTTGCAG
GGCACCTCTCTTCCTTGGCAGA
CAGTACTAATGGTGCCTATAGCTTCAAGCTGAGAGGGTATGCGAGAATCTTGATCCCAATATAGG
CT
TGCCAAAGGAGAGTTTCCCT
GTGACCGTTT
dot-bracket secondary structure
((((..((..(((
((...(((((((..((((((..
((.......))..(((((((((.....)).....(((....((((...))))..)))..))))))
).
)))))))))))))...))))
)..)).))))
SIMILARITIES
miRBase
ptc-MIR399h
:
6e-71
PMRD
ptc-miR399h
:
6e-71
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miR399h
from PMRD (
MNEST051754
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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