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ABOUT THIS RECORD
ID:
MNEST051353
species:
Populus tremula x Populus tremuloides
miRNA family:
MIR403
source:
PMRD, original name:
ppl-miR403
Taxonomy by NCBI:
Populus tremula x Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTAGATTCACGCACAAACTCG
miRNA*
TGTTTTGTGCTTGAATCTAATT
mismatches:
3
bulges:
1
View larger
pre-miRNA
TTGTCATTAGAAGAGTCGTATTACA
TGTTTTGTGCTTGAATCTAATT
CAACAGGCTTTATGTAAGAGATTCTTTAACAATTCCTATAATCTTTGTTGTTG
GA
TTAGATTCACGCACAAACTCG
TAATCTGTCTTT
dot-bracket secondary structure
...........((((.((.(((((.
.((((.((((.(((((((((((
(((((.((.....)).(((((((................)))))))..)))))
))
))))))))).))))))))..)
)))).)).))))
SIMILARITIES
miRBase
ath-MIR403
:
1e-72
PMRD
ath-miR403
:
1e-72
microPC
miR403
:
0.0001
UniProt
no hits
RFAM
MIR403: 2e-61
Identical with:
ath-miR403
from PMRD (
MNEST047024
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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