ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIR403
source: PMRD, original name: ppl-miR403
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATTCACGCACAAACTCG miRNA* TGTTTTGTGCTTGAATCTAATT mismatches: 3 bulges: 1 |
pre-miRNA
TTGTCATTAGAAGAGTCGTATTACATGTTTTGTGCTTGAATCTAATTCAACAGGCTTTATGTAAGAGATTCTTTAACAATTCCTATAATCTTTGTTGTTG
GATTAGATTCACGCACAAACTCGTAATCTGTCTTT
dot-bracket secondary structure
...........((((.((.(((((..((((.((((.((((((((((((((((.((.....)).(((((((................)))))))..)))))
))))))))))).))))))))..))))).)).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTGTCATTAGAAGAGTCGTATTACATGTTTTGTGCTTGAATCTAATTCAACAGGCTTTATGTAAGAGATTCTTTAACAATTCCTATAATCTTTGTTGTTG
GATTAGATTCACGCACAAACTCGTAATCTGTCTTT
dot-bracket secondary structure
...........((((.((.(((((..((((.((((.((((((((((((((((.((.....)).(((((((................)))))))..)))))
))))))))))).))))))))..))))).)).))))
SIMILARITIES| miRBase ath-MIR403: 1e-72 PMRD ath-miR403: 1e-72 microPC miR403: 0.0001 | UniProt no hits RFAM MIR403: 2e-61 |
Identical with: ath-miR403 from PMRD (MNEST047024) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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