ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: PMRD, original name: ppt-miR166d
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGATGATTGGACCGAAG mismatches: 4 bulges: 0 |
pre-miRNA
CATATTAGTCATATGCGGCTTGTCCTTGGGGAATGATGATTGGACCGAAGTTTTTTAGCGTTGGTTTGCCCAATTAAAGCTTCGGACCAGGCTTCATTCC
CCTCGTAGAAGTTGCATGATGATGCAAT
dot-bracket secondary structure
.......((((((((((((((.(.(..(((((((((...((((.((((((((((.....(((((.....))))).)))))))))).))))...)))))))
))..).).))))))))).))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CATATTAGTCATATGCGGCTTGTCCTTGGGGAATGATGATTGGACCGAAGTTTTTTAGCGTTGGTTTGCCCAATTAAAGCTTCGGACCAGGCTTCATTCC
CCTCGTAGAAGTTGCATGATGATGCAAT
dot-bracket secondary structure
.......((((((((((((((.(.(..(((((((((...((((.((((((((((.....(((((.....))))).)))))))))).))))...)))))))
))..).).))))))))).))))).....
SIMILARITIES| miRBase ppt-MIR166d: 1e-68 PMRD ppt-miR166a: 0.00000000003 microPC miR166: 0.0000001 | UniProt no hits RFAM mir-166: 1e-41 |
Identical with: ppt-MIR166d from miRBase (MNEST039467) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
