ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: PMRD, original name: ppt-miR166f
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGCTGCATGGTCTGATG mismatches: 4 bulges: 0 |
pre-miRNA
ATGACCAGCATACCAGTGGTGCTGTGCTGGGAGGAATGCTGCATGGTCTGATGCTTTTGCTGCGACACAAGCCTCGGACCAGGCTTCATTCCCCTCAGCT
CAGTCTCATATTGACGGTTCAAG
dot-bracket secondary structure
.(((((..((.....(((..((((.((((((.((((((..((.((((((((.((((.((......)).)))).)))))))).))..)))))).)))))).
))))..)))..))..)).)))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
ATGACCAGCATACCAGTGGTGCTGTGCTGGGAGGAATGCTGCATGGTCTGATGCTTTTGCTGCGACACAAGCCTCGGACCAGGCTTCATTCCCCTCAGCT
CAGTCTCATATTGACGGTTCAAG
dot-bracket secondary structure
.(((((..((.....(((..((((.((((((.((((((..((.((((((((.((((.((......)).)))).)))))))).))..)))))).)))))).
))))..)))..))..)).)))..
SIMILARITIES| miRBase ppt-MIR166f: 1e-65 PMRD ppt-miR166g: 0.000000002 microPC miR166: 0.000006 | UniProt no hits RFAM mir-166: 4e-35 |
Identical with: ppt-MIR166f from miRBase (MNEST039469) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
