ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: PMRD, original name: ppt-miR166h
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGACGAGTGGCCCAGA mismatches: 5 bulges: 1 |
pre-miRNA
AGTTCGACAAGACTATGAGACTTTGTCATGAGGAATGACGAGTGGCCCAGATTCGTTTCTGGTCTAGAAATTGAATTTCGGACCAGGCTTCATTCCCCTT
GGCACGGTTCCATGGAGGTACTGTCA
dot-bracket secondary structure
.....((((..((((((..(((.(((((.(.(((((((.(..(((((.(((((((((((((...)))))).))))))).)).)))..).))))))).).)
)))).)))..)))...)))..)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
AGTTCGACAAGACTATGAGACTTTGTCATGAGGAATGACGAGTGGCCCAGATTCGTTTCTGGTCTAGAAATTGAATTTCGGACCAGGCTTCATTCCCCTT
GGCACGGTTCCATGGAGGTACTGTCA
dot-bracket secondary structure
.....((((..((((((..(((.(((((.(.(((((((.(..(((((.(((((((((((((...)))))).))))))).)).)))..).))))))).).)
)))).)))..)))...)))..)))).
SIMILARITIES| miRBase ppt-MIR166h: 2e-67 PMRD vvi-miR166g: 0.0000004 microPC miR166: 0.000006 | UniProt no hits RFAM mir-166: 4e-38 |
Identical with: ppt-MIR166h from miRBase (MNEST039471) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
