ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: PMRD, original name: ppt-miR166k
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGACCAGGCTTCATTCCC miRNA* GAATGACGTATGGCCCGAAGC mismatches: 5 bulges: 0 |
pre-miRNA
GAAGATGCTGGATGTGCCTTTGCCGTGAGGAATGACGTATGGCCCGAAGCTATCTCTTGGATGGCCTTGATGAAGCTCCGGACCAGGCTTCATTCCCCTC
GGCGGAGTTGCAAATGTGGACAC
dot-bracket secondary structure
.....(((((.((.(((((((((((.(.(((((((.((.(((.(((.((((.((((..((....))..)).)))))).))).))).)).))))))).).)
)))))))..))).)).))).)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GAAGATGCTGGATGTGCCTTTGCCGTGAGGAATGACGTATGGCCCGAAGCTATCTCTTGGATGGCCTTGATGAAGCTCCGGACCAGGCTTCATTCCCCTC
GGCGGAGTTGCAAATGTGGACAC
dot-bracket secondary structure
.....(((((.((.(((((((((((.(.(((((((.((.(((.(((.((((.((((..((....))..)).)))))).))).))).)).))))))).).)
)))))))..))).)).))).)).
SIMILARITIES| miRBase ppt-MIR166k: 1e-65 PMRD ppt-miR166j: 5e-34 microPC miR166: 0.00009 | UniProt no hits RFAM mir-166: 6e-28 |
Identical with: ppt-MIR166k from miRBase (MNEST039474) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
