ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR390
source: PMRD, original name: ppt-miR390b
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATTCTGAGCTTTG mismatches: 3 bulges: 0 |
pre-miRNA
ATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGC
AGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACCGGATCGGTTAGCTGGT
dot-bracket secondary structure
((((.(((((((((.((((((.((.((((((((((((.((((((((..((((.(((((((((((((.((...(((......)))..))))))))))).))
))..)).)).)))))))).)))))))))))).)).)))))).)))..((((((....)))))).)).))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
ATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGC
AGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACCGGATCGGTTAGCTGGT
dot-bracket secondary structure
((((.(((((((((.((((((.((.((((((((((((.((((((((..((((.(((((((((((((.((...(((......)))..))))))))))).))
))..)).)).)))))))).)))))))))))).)).)))))).)))..((((((....)))))).)).))))))))
SIMILARITIES| miRBase ppt-MIR390b: 2e-96 PMRD ppt-miR390a: 0.000000000009 microPC miR390: 0.0001 | UniProt no hits RFAM MIR390: 2e-68 |
Identical with: ppt-MIR390b from miRBase (MNEST039486) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
