ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR529
source: PMRD, original name: ppt-miR529f
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAAGAGAGAGAGTACAGCCC miRNA* GCTGTGCTCTCTCTCTTCTTG mismatches: 0 bulges: 0 |
pre-miRNA
TGCACAATTTTCTCACTCATGCTGGGATCAGAAGAGAGAGAGTACAGCCCAACGGCCGATGTTCAGTTGGAACGGGCTGTGCTCTCTCTCTTCTTGTTCC
AACCTGGGTGCATTTCCGTTCT
dot-bracket secondary structure
.............((((((.(.((((((.(((((((((((((((((((((.....(((((.....)))))...))))))))))))))))))))).)))))
).).))))))............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TGCACAATTTTCTCACTCATGCTGGGATCAGAAGAGAGAGAGTACAGCCCAACGGCCGATGTTCAGTTGGAACGGGCTGTGCTCTCTCTCTTCTTGTTCC
AACCTGGGTGCATTTCCGTTCT
dot-bracket secondary structure
.............((((((.(.((((((.(((((((((((((((((((((.....(((((.....)))))...))))))))))))))))))))).)))))
).).))))))............
SIMILARITIES| miRBase ppt-MIR529f: 5e-65 PMRD ppt-miR529e: 1e-28 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-MIR529f from miRBase (MNEST039508) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
