ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR533
source: PMRD, original name: ppt-miR533a
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCACAGTCTGCACAGCTCTC miRNA* GAGCTGGCCAGGCTGTGAGGG mismatches: 2 bulges: 0 |
pre-miRNA
ATGGGGAGCTGGCCAGGCTGTGAGGGACGGAGCAGAGTTGGCTTGTGGCTCCTTGTGGCCCCCTCCAGCAGCTTCCTCCTCACAGTCTGCACAGCTCTCC
GT
dot-bracket secondary structure
(((((((((((..(((((((((((((..(((((...(((((...(.((((......)))))...))))).))))).)))))))))))))..)))))))))
))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
ATGGGGAGCTGGCCAGGCTGTGAGGGACGGAGCAGAGTTGGCTTGTGGCTCCTTGTGGCCCCCTCCAGCAGCTTCCTCCTCACAGTCTGCACAGCTCTCC
GT
dot-bracket secondary structure
(((((((((((..(((((((((((((..(((((...(((((...(.((((......)))))...))))).))))).)))))))))))))..)))))))))
))
SIMILARITIES| miRBase ppt-MIR533a: 4e-53 PMRD ppt-miR533a: 4e-53 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-MIR533a from miRBase (MNEST039510) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
