ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR534
source: PMRD, original name: ppt-miR534b
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGTCCATTACAGTTGCATAC miRNA* ATGCAACTTGTATGGACAGAGT mismatches: 1 bulges: 2 |
pre-miRNA
GCACTCATGTATGCAACTTGTATGGACAGAGTGACTAGTCTAGTGTTCACGAGTGCCAATTTTTGGATGCCTTCTATTGCTGTGCTGGTCTGTGAGGCGG
CGTAACTCCTTGTTTTGCAACAGTTGACAGTGCACAAAGTATATGTGTGGCTGGTGACGTGCGACGCATTGGGTAAGATCTATGTCTCTTCAGTGCGCGG
GGAAGTTTGTCCGCCGACGGCATTCAGATTGCTAAACTAGACTCGTCAGTATGTCCATTACAGTTGCATACTTGTGTGG
dot-bracket secondary structure
.(((.((.((((((((((.(((((((((.(.((((.((((((((((....(((((((......(((((..(((((.((((.(..((((.....((((((.
.((.((((..(((.(((((...(((..(((((((((.......))))).))))..))).))))).)))..))))...))...)))))).))))..)))))
)))))...))))).....))))))).....))...)))))))).)))).).)))))).))))))))))))).)).))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GCACTCATGTATGCAACTTGTATGGACAGAGTGACTAGTCTAGTGTTCACGAGTGCCAATTTTTGGATGCCTTCTATTGCTGTGCTGGTCTGTGAGGCGG
CGTAACTCCTTGTTTTGCAACAGTTGACAGTGCACAAAGTATATGTGTGGCTGGTGACGTGCGACGCATTGGGTAAGATCTATGTCTCTTCAGTGCGCGG
GGAAGTTTGTCCGCCGACGGCATTCAGATTGCTAAACTAGACTCGTCAGTATGTCCATTACAGTTGCATACTTGTGTGG
dot-bracket secondary structure
.(((.((.((((((((((.(((((((((.(.((((.((((((((((....(((((((......(((((..(((((.((((.(..((((.....((((((.
.((.((((..(((.(((((...(((..(((((((((.......))))).))))..))).))))).)))..))))...))...)))))).))))..)))))
)))))...))))).....))))))).....))...)))))))).)))).).)))))).))))))))))))).)).))).
SIMILARITIES| miRBase ppt-MIR534b: 2e-158 PMRD ppt-miR534a: 0.00000006 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-MIR534b from miRBase (MNEST039517) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
