ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR535
source: PMRD, original name: ppt-miR535c
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAACGAGAGAGAGCACGC miRNA* GTGCCCTTTCCCGTTGTCGC mismatches: 2 bulges: 0 |
pre-miRNA
GTGACAACGAGAGAGAGCACGCTGGAATGCTTTCACGCAATAAGCCTGGATGTGTTCTTGCGTGCCCTTTCCCGTTGTCGC
dot-bracket secondary structure
(((((((((.(((((.((((((.(((((((.((((.((.....)).)))).))))))).)))))).))))).)))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTGACAACGAGAGAGAGCACGCTGGAATGCTTTCACGCAATAAGCCTGGATGTGTTCTTGCGTGCCCTTTCCCGTTGTCGC
dot-bracket secondary structure
(((((((((.(((((.((((((.(((((((.((((.((.....)).)))).))))))).)))))).))))).)))))))))
SIMILARITIES| miRBase ppt-MIR535c: 9e-41 PMRD ppt-miR535a: 3e-22 microPC miR535: 0.00001 | UniProt no hits RFAM MIR535: 2e-39 |
Identical with: ppt-MIR535c from miRBase (MNEST039520) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
