ABOUT THIS RECORDspecies: Physcomitrella patens
source: PMRD, original name: ppt-miR536a
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCGTGCCAAGCTGTGTGCAAC miRNA* TGTCACTGCTTGGCACAATC mismatches: 2 bulges: 2 |
pre-miRNA
TGATTCCACCCCTTGGATGTCACTGCTTGGCACAATCCTCTTATTGTGAATTTCATGTCCTCTTTCGTGGTTAGTCGATAGAGTTGTACTACCTTTATTC
ATCCAGTGTTATAAATGTTTGTCCAGTGCTAGCTCTTCACTTGGGGATTGCACAACAGGGGGTTCGTGCCAAGCTGTGTGCAACCTAAGGGTGGTTTTA
dot-bracket secondary structure
(((..((((((...((.((((((.(((((((((((((((((..(((((........((((((....((((.........(((((((((((((.(((((.(
((...)))..))))).))......))))).))))))))))..))))))..))))).)))))))).))))))))).))).))).))...))))))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TGATTCCACCCCTTGGATGTCACTGCTTGGCACAATCCTCTTATTGTGAATTTCATGTCCTCTTTCGTGGTTAGTCGATAGAGTTGTACTACCTTTATTC
ATCCAGTGTTATAAATGTTTGTCCAGTGCTAGCTCTTCACTTGGGGATTGCACAACAGGGGGTTCGTGCCAAGCTGTGTGCAACCTAAGGGTGGTTTTA
dot-bracket secondary structure
(((..((((((...((.((((((.(((((((((((((((((..(((((........((((((....((((.........(((((((((((((.(((((.(
((...)))..))))).))......))))).))))))))))..))))))..))))).)))))))).))))))))).))).))).))...))))))..)))
SIMILARITIES| miRBase ppt-MIR536a: 9e-111 PMRD ppt-miR536e: 0.00001 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-MIR536a from miRBase (MNEST039522) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
