ABOUT THIS RECORDspecies: Physcomitrella patens
source: PMRD, original name: ppt-miR893
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGGGACTTGTGCTGGGAC miRNA* CTTGATGCACGACCCAATCC mismatches: 1 bulges: 4 |
pre-miRNA
CTCTGCATTGCTCTCAAACCTCCTCCCTCTTCCTTGTCCTAGCATAGATCCCAGTCCCTTCTTCCTTGTCTTGATGCACGACCCAATCCTCTCCTCTTCT
TCTTTATCCCGTCATACCCATACTAAGACAAGAAAGAGTTGGAAGAGAGAATTGGGACTTGTGCTGGGACAAGGAAGAAAGGAACTACTACTTGCACCAA
GACAAGGAAAAGGAGGAGGA
dot-bracket secondary structure
..................((((((((...(((((((((...(((.((.......(((.((((((((((((((...((((((((((((.(((((.(((..(
(((((.....(((.............)))...))))))..))).))))).))))))..)))))).)))))))))))))).))).......))))).....
)))))))))..)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
CTCTGCATTGCTCTCAAACCTCCTCCCTCTTCCTTGTCCTAGCATAGATCCCAGTCCCTTCTTCCTTGTCTTGATGCACGACCCAATCCTCTCCTCTTCT
TCTTTATCCCGTCATACCCATACTAAGACAAGAAAGAGTTGGAAGAGAGAATTGGGACTTGTGCTGGGACAAGGAAGAAAGGAACTACTACTTGCACCAA
GACAAGGAAAAGGAGGAGGA
dot-bracket secondary structure
..................((((((((...(((((((((...(((.((.......(((.((((((((((((((...((((((((((((.(((((.(((..(
(((((.....(((.............)))...))))))..))).))))).))))))..)))))).)))))))))))))).))).......))))).....
)))))))))..)))))))).
SIMILARITIES| miRBase ppt-MIR893: 3e-123 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-MIR893 from miRBase (MNEST039535) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
