ABOUT THIS RECORDspecies: Physcomitrella patens
source: PMRD, original name: ppt-miR894
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTTTCACGTCGGGTTCACC miRNA* TGAAGTTTTGATTGAGAATGCA mismatches: 1 bulges: 4 |
pre-miRNA
CATAATTCAAATAATCCAAAAAAAATAAACCAAATACCTTCCACCTCAAGCGTTTCACGTCGGGTTCACCAAATATGTTGTATTATGTGAAGTTTTGATT
GAGAATGCACCGAGCACTTGGCTATGGAAGGTAAAAGAAAATTGCAACAAAAAGTCCTAACAATCCAATAGGATTATAGAAAATTTATAATTAAACGTTA
ACAATCATAATCAAACAATA
dot-bracket secondary structure
.....(((..(((((((.................(((((((((......((((((((.(((((((((((..(((((...)))))..)))))..)))))))
))).)))).((((....))))...)))))))))....................((....)).........))))))).)))...................
....................
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
CATAATTCAAATAATCCAAAAAAAATAAACCAAATACCTTCCACCTCAAGCGTTTCACGTCGGGTTCACCAAATATGTTGTATTATGTGAAGTTTTGATT
GAGAATGCACCGAGCACTTGGCTATGGAAGGTAAAAGAAAATTGCAACAAAAAGTCCTAACAATCCAATAGGATTATAGAAAATTTATAATTAAACGTTA
ACAATCATAATCAAACAATA
dot-bracket secondary structure
.....(((..(((((((.................(((((((((......((((((((.(((((((((((..(((((...)))))..)))))..)))))))
))).)))).((((....))))...)))))))))....................((....)).........))))))).)))...................
....................
SIMILARITIES| miRBase ppt-MIR894: 7e-109 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
