ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR899
source: PMRD, original name: ppt-miR899
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACTGAGATACATCGCAATCG miRNA* TCCACGTTCG mismatches: 13 bulges: 99 |
pre-miRNA
ACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATT
GACGAGTGCAAGAAGACCCTCTTTCCATGTTCCAGACGCAGGCCTTCGCCGAACTGAGATACATCGCAATCGACACACCGGCCGCTTCAGAATCAGTGAC
TAGCATACCCAGCTGCTATTGG
dot-bracket secondary structure
..((..((((((.....))))))..)).....(((((((.....((((((.((.(((......((((((.......(((((...(..((((.((((((..
...................)))))))).))..)....)))))......)))))).((......))......))).)).)))))).....)))))))....
(((((........)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
ACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATT
GACGAGTGCAAGAAGACCCTCTTTCCATGTTCCAGACGCAGGCCTTCGCCGAACTGAGATACATCGCAATCGACACACCGGCCGCTTCAGAATCAGTGAC
TAGCATACCCAGCTGCTATTGG
dot-bracket secondary structure
..((..((((((.....))))))..)).....(((((((.....((((((.((.(((......((((((.......(((((...(..((((.((((((..
...................)))))))).))..)....)))))......)))))).((......))......))).)).)))))).....)))))))....
(((((........)))))....
SIMILARITIES| miRBase ppt-MIR899: 2e-124 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-MIR899 from miRBase (MNEST039541) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
