ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1026
source: PMRD, original name: ppt-miR1026a
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGAAAGACTTGAGAGGACA miRNA* TTCTTTCAAGCCTTCCTCGGA mismatches: 3 bulges: 0 |
pre-miRNA
ATGAAAGTTCTTGAGACACTCTCTAGGTCTGAGAAAGACTTGAGAGGACACTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTG
GTTCCCTGAGCATTTGCAGGACAGTTCTTTCAAGCCTTCCTCGGACTTTGGATTGTTTGTTCCATATCATG
dot-bracket secondary structure
((((.........(((((.(((..(((((((((.(((.(((((((((((..((((.(((..((.((((((((..(....(((((......)))))..)..
)))))).))))..))).))))..))))))))))).))).))))))))).))).)))))........)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
ATGAAAGTTCTTGAGACACTCTCTAGGTCTGAGAAAGACTTGAGAGGACACTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTG
GTTCCCTGAGCATTTGCAGGACAGTTCTTTCAAGCCTTCCTCGGACTTTGGATTGTTTGTTCCATATCATG
dot-bracket secondary structure
((((.........(((((.(((..(((((((((.(((.(((((((((((..((((.(((..((.((((((((..(....(((((......)))))..)..
)))))).))))..))).))))..))))))))))).))).))))))))).))).)))))........)))).
SIMILARITIES| miRBase ppt-MIR1026a: 4e-94 PMRD ppt-miR1026b: 0.000000009 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-MIR1026a from miRBase (MNEST039584) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
