ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1033
source: PMRD, original name: ppt-miR1033c
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACGGGTCGTGATGGGCACT miRNA* TGCCCAACACGATCTGTCAAC mismatches: 3 bulges: 0 |
pre-miRNA
GAGATGAAGATGGAATTGATGGGATGTTGGGCATGCCCAACACGATCTGTCAACATTCTATGTTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCA
CTTCATGATAATATAACTC
dot-bracket secondary structure
...((((((............((((((((((..((((((.(((((((((((((.((........)).))))))))))))).))))))..)))))))))).
)))))).............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GAGATGAAGATGGAATTGATGGGATGTTGGGCATGCCCAACACGATCTGTCAACATTCTATGTTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCA
CTTCATGATAATATAACTC
dot-bracket secondary structure
...((((((............((((((((((..((((((.(((((((((((((.((........)).))))))))))))).))))))..)))))))))).
)))))).............
SIMILARITIES| miRBase ppt-MIR1033c: 3e-63 PMRD ppt-miR1033b: 3e-38 microPC miR1033: 4e-16 | UniProt no hits RFAM no hits |
Identical with: ppt-MIR1033c from miRBase (MNEST039610) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
