ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1065
source: PMRD, original name: ppt-miR1065
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGTCTCTGACTTCTCGCAG miRNA* GCGGGAAATCAGAGACAGTCG mismatches: 3 bulges: 0 |
pre-miRNA
GATCCATTGTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCAGAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCAC
TAGGCAAAAACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTC
TAATTGTCACCA
dot-bracket secondary structure
.............((..(((((((((..(((.((((((((.((((((((...(((((....(((((((((.(((..((((((...(.((((((..(((((
(((((((.....))))..)))))).)))))))).))))))).))).))))))))).)))))...)))))))).)))))))).)))..)))))))))..))
............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GATCCATTGTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCAGAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCAC
TAGGCAAAAACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTC
TAATTGTCACCA
dot-bracket secondary structure
.............((..(((((((((..(((.((((((((.((((((((...(((((....(((((((((.(((..((((((...(.((((((..(((((
(((((((.....))))..)))))).)))))))).))))))).))).))))))))).)))))...)))))))).)))))))).)))..)))))))))..))
............
SIMILARITIES| miRBase ppt-MIR1065: 2e-118 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-MIR1065 from miRBase (MNEST039664) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
