ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1219
source: PMRD, original name: ppt-miR1219b
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCCTGCCTCTCACTAGCTT miRNA* CTATTGGGAAGCAGGAACAG mismatches: 3 bulges: 1 |
pre-miRNA
CTCTTCCTGCCTCTCACTAGCTTCATCCCTTCGAACCCGAAGGTACTAAGGTAAGGAACTATTGGGAAGCAGGAACAG
dot-bracket secondary structure
((.(((((((.(((((.(((.(((...((((((....))))))(((....)))..)))))).))))).))))))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T, Plant J. 47:25-37(2006)., "Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CTCTTCCTGCCTCTCACTAGCTTCATCCCTTCGAACCCGAAGGTACTAAGGTAAGGAACTATTGGGAAGCAGGAACAG
dot-bracket secondary structure
((.(((((((.(((((.(((.(((...((((((....))))))(((....)))..)))))).))))).))))))).))
SIMILARITIES| miRBase ppt-MIR1219b: 5e-39 PMRD ppt-miR1219a: 0.00000000002 microPC miR1219: 0.0000000009 | UniProt no hits RFAM no hits |
Identical with: ppt-MIR1219b from miRBase (MNEST039694) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T, Plant J. 47:25-37(2006)., "Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
