ABOUT THIS RECORDspecies: Physcomitrella patens
source: PMRD, original name: ppt-miR2081
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCTAGAGTTATGTGTCTGAT miRNA* CAGACACATAACTCTAGCTAT mismatches: 0 bulges: 0 |
pre-miRNA
GTTTGCCCAGTACTCCAGTGATCAGACACATAACTCTAGCTATTGGGCAGACAGTGTTAGAGTAGACAGTGTCTGCCCAATAGCTAGAGTTATGTGTCTG
ATTTAAGAGCAGGTGTCTTTAA
dot-bracket secondary structure
....(((.....(((....((((((((((((((((((((((((((((((((((.((((......)))).)))))))))))))))))))))))))))))))
)))...)))..)))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ, PLoS Genet. 4:e1000314(2008)., "Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development"
GTTTGCCCAGTACTCCAGTGATCAGACACATAACTCTAGCTATTGGGCAGACAGTGTTAGAGTAGACAGTGTCTGCCCAATAGCTAGAGTTATGTGTCTG
ATTTAAGAGCAGGTGTCTTTAA
dot-bracket secondary structure
....(((.....(((....((((((((((((((((((((((((((((((((((.((((......)))).)))))))))))))))))))))))))))))))
)))...)))..)))........
SIMILARITIES| miRBase ppt-MIR2081: 5e-65 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-MIR2081 from miRBase (MNEST039720) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ, PLoS Genet. 4:e1000314(2008)., "Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development"
