ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR2084
source: PMRD, original name: ppt-miR2084
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGCATTGTTGGATTGTGGA miRNA* CACAATCCATCGAAGCAGGCG mismatches: 3 bulges: 0 |
pre-miRNA
CAGTTACAAGTATCTTGAAATTCGTGGAAGCGCCTGCATTGTTGGATTGTGGACTACAACGGAGGAGTAGCCCACAATCCATCGAAGCAGGCGCTTCAAC
GACTTTCAGATTTT
dot-bracket secondary structure
...........((((.((((.((((.(((((((((((.(((.((((((((((.((((.........)))).)))))))))).))).))))))))))).))
)).))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ, PLoS Genet. 4:e1000314(2008)., "Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development"
CAGTTACAAGTATCTTGAAATTCGTGGAAGCGCCTGCATTGTTGGATTGTGGACTACAACGGAGGAGTAGCCCACAATCCATCGAAGCAGGCGCTTCAAC
GACTTTCAGATTTT
dot-bracket secondary structure
...........((((.((((.((((.(((((((((((.(((.((((((((((.((((.........)))).)))))))))).))).))))))))))).))
)).))))))))...
SIMILARITIES| miRBase ppt-MIR2085: 3e-60 PMRD ppt-miR2085: 3e-60 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR2085 from PMRD (MNEST051545) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ, PLoS Genet. 4:e1000314(2008)., "Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development"
