ABOUT THIS RECORDspecies: Picea sitchensis
source: PMRD, original name: psi-miR159
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGGGAGCTCCA miRNA* GAGCTCCCTTCAGTCCAACCA mismatches: 2 bulges: 0 |
pre-miRNA
TGGAGCTCCCTTCAGTCCAACCAAAGCTTGTGCGGCGGTGGTTCAGCTGCTGATTCATGCATTCGACTGCCCTGTCCGTGACTTTCCAGCAGCCTGAATC
AATCAATCTATCTCCATGACAGGATAGTGGTGTGCATGACGCAGGAGATGTATTGTCACTGGACACGCATTCCTTGGATTGAAGGGAGCTCCA
dot-bracket secondary structure
.(((((((((((((((((((..((.((.(((.(((.((..((.((.((.(((..((((((((.(.((((.((((((..((......))..((..(((...
..)))..))........)))))).)))).).))))))))..))).)).)).))..)).))).))).)).))..))))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGAGCTCCCTTCAGTCCAACCAAAGCTTGTGCGGCGGTGGTTCAGCTGCTGATTCATGCATTCGACTGCCCTGTCCGTGACTTTCCAGCAGCCTGAATC
AATCAATCTATCTCCATGACAGGATAGTGGTGTGCATGACGCAGGAGATGTATTGTCACTGGACACGCATTCCTTGGATTGAAGGGAGCTCCA
dot-bracket secondary structure
.(((((((((((((((((((..((.((.(((.(((.((..((.((.((.(((..((((((((.(.((((.((((((..((......))..((..(((...
..)))..))........)))))).)))).).))))))))..))).)).)).))..)).))).))).)).))..))))))))))))))))))).
SIMILARITIES| miRBase pta-MIR319: 4e-73 PMRD pta-miR319: 4e-73 microPC miR319: 5e-106 | UniProt no hits RFAM no hits |
Identical with: miR319 from microPC (MNEST046495) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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