ABOUT THIS RECORDspecies: Picea sitchensis
source: PMRD, original name: psi-miR163
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGAAGACTTGGAGCTTCGA miRNA* GCAGGCACCAGTAGAGTTCCTC mismatches: 6 bulges: 2 |
pre-miRNA
TGAAGAAGACTTGGAGCTTCGACTTGGACTGACAGTTCCAGGAAGGACATCAGCAGACCCCAATCCCCGTCGCAGGCACCAGTAGAGTTCCTC
dot-bracket secondary structure
.(((....(((.((.((((((((..(((((((..((((......)))).))))..........)))..)))).)))).)))))....)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
TGAAGAAGACTTGGAGCTTCGACTTGGACTGACAGTTCCAGGAAGGACATCAGCAGACCCCAATCCCCGTCGCAGGCACCAGTAGAGTTCCTC
dot-bracket secondary structure
.(((....(((.((.((((((((..(((((((..((((......)))).))))..........)))..)))).)))).)))))....)))...
SIMILARITIES| miRBase no hits PMRD pta-miR163b: 2e-29 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
