ABOUT THIS RECORDspecies: Picea sitchensis
source: PMRD, original name: psi-miR172
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCAC miRNA* GTAGCCAATCATGTGAAGGAACAGCA mismatches: 6 bulges: 5 |
pre-miRNA
CTGTAGCCAATCATGTGAAGGAACAGCAGCTGAAATTATTTGGGGTGAGAATCCTGATGATGCTGCAC
dot-bracket secondary structure
.((((((..(((((....((((....((.((.((.....)).)).))....)))).))))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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CTGTAGCCAATCATGTGAAGGAACAGCAGCTGAAATTATTTGGGGTGAGAATCCTGATGATGCTGCAC
dot-bracket secondary structure
.((((((..(((((....((((....((.((.((.....)).)).))....)))).))))))))))).
SIMILARITIES| miRBase sbi-MIR172f: 0.0000008 PMRD pga-miR172: 0.00000000001 microPC miR172: 0.00005 | UniProt no hits RFAM mir-172: 0.00001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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