ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR159
source: PMRD, original name: pta-miR159b
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGATTGAAGAGAGCTCCC miRNA* GAGCTTTCTTCAGTCCAACG mismatches: 0 bulges: 0 |
pre-miRNA
ATTACGGGGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTTGTAATCCTCGAGGTTCAGTATT
GGCGGCAAGATAATGGTGTGCATGACACGGGAGTCGTATTGCCACTACGCTGTTTTTACTTGGATTGAAGAGAGCTCCCAGAAA
dot-bracket secondary structure
).....((((((((((((((((((((..((((((.(..(((((.((((.(.(((.(((..(((((.((.(((.((((((((...((...............
))..)))))))).))).)).)))))..))).))).).)))))).)))..).))))))..)))))))))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
ATTACGGGGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTTGTAATCCTCGAGGTTCAGTATT
GGCGGCAAGATAATGGTGTGCATGACACGGGAGTCGTATTGCCACTACGCTGTTTTTACTTGGATTGAAGAGAGCTCCCAGAAA
dot-bracket secondary structure
).....((((((((((((((((((((..((((((.(..(((((.((((.(.(((.(((..(((((.((.(((.((((((((...((...............
))..)))))))).))).)).)))))..))).))).).)))))).)))..).))))))..)))))))))))))))))))).....
SIMILARITIES| miRBase pta-MIR159b: 8.0E-102 PMRD no hits microPC miR159: 7.0E-96 | UniProt no hits RFAM no hits |
Identical with: miR159 from microPC (MNEST046214), pta-MIR159b from miRBase , miR159 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
