ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR166
source: PMRD, original name: pta-miR166b
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGACTGCAGCCTGGCACGAGA mismatches: 4 bulges: 0 |
pre-miRNA
CGGCAGAGTTGGGGTGAGGGGACTGCAGCCTGGCACGAGACCTGAAAACTTTTCTGACAAGCAGCCGGGCGGGCAGAGTCACGCATGGTGTCGGACCAGGC
TTCATTCCCCTCACAACACTCTTCC
dot-bracket secondary structure
)((.(((((.(..(((((((((.((.(((((((..(((.(((((.......(((((.(..((......))..)))))).....)).))).)))..))))))
).)).)))))))))..)))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
CGGCAGAGTTGGGGTGAGGGGACTGCAGCCTGGCACGAGACCTGAAAACTTTTCTGACAAGCAGCCGGGCGGGCAGAGTCACGCATGGTGTCGGACCAGGC
TTCATTCCCCTCACAACACTCTTCC
dot-bracket secondary structure
)((.(((((.(..(((((((((.((.(((((((..(((.(((((.......(((((.(..((......))..)))))).....)).))).)))..))))))
).)).)))))))))..)))))).))
SIMILARITIES| miRBase pta-MIR166b: 8.0E-67 PMRD smo-miR166c: 3.0E-8 microPC miR166: 6.0E-6 | UniProt no hits RFAM 6mir-166: 2.0E-6 |
Identical with: pta-MIR166b from miRBase (MNEST039421) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
