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ABOUT THIS RECORD

ID: MNEST051559
species: Pinus taeda
miRNA family: MIR166
source: PMRD, original name: pta-miR166b

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGACTGCAGCCTGGCACGAGA

mismatches: 4
bulges: 0

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pre-miRNA
GGCAGAGTTGGGGTGAGGGGACTGCAGCCTGGCACGAGACCTGAAAACTTTTCTGACAAGCAGCCGGGCGGGCAGAGTCACGCATGGTGTCGGACCAGGC
TTCATTCCCC
TCACAACACTCTTCC


dot-bracket secondary structure
((.(((((.(..(((((((((.((.(((((((..(((.(((((.......(((((.(..((......))..)))))).....)).))).)))..))))))
).)).)))))
))))..)))))).))



SIMILARITIES
miRBase pta-MIR166b: 8e-67

PMRD smo-miR166c: 0.00000003

microPC miR166: 0.000006
UniProt no hits

RFAM mir-166: 0.000002

Identical with: pta-MIR166b from miRBase (MNEST039421)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




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