ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR396
source: PMRD, original name: pta-miR396
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTCAAGAAAACTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
GAATCTTGTCATACTTTTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTG
GGAAAGCATGGTAGGATTC
dot-bracket secondary structure
(((((((..(((.(((((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).)))))
)))))).)))..)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
GAATCTTGTCATACTTTTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTG
GGAAAGCATGGTAGGATTC
dot-bracket secondary structure
(((((((..(((.(((((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).)))))
)))))).)))..)))))))
SIMILARITIES| miRBase pta-MIR396: 3e-63 PMRD ath-miR396b: 0.0000000001 microPC miR396: 4e-44 | UniProt no hits RFAM MIR396: 5e-53 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
