ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR398
source: PMRD, original name: pta-miR398
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCCAAGGTCACCCCAG miRNA* GGGGCGACCTGGGAACACGTC mismatches: 3 bulges: 0 |
pre-miRNA
AGCAGAGGAGGTTTCCACCGGGGCGACCTGGGAACACGTCTACATTAATGTAATCTCTTGATTTCTCCATGAGTCCTGTGAATGTGAATGTGTTCCAAGG
TCACCCCAGTCGAGCCTACTCTCT
dot-bracket secondary structure
((.((((.(((((.(.((.((((.(((((.(((((((((.((((((........(((.((.......)).))).......)))))).))))))))).)))
)).)))).)).)))))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
AGCAGAGGAGGTTTCCACCGGGGCGACCTGGGAACACGTCTACATTAATGTAATCTCTTGATTTCTCCATGAGTCCTGTGAATGTGAATGTGTTCCAAGG
TCACCCCAGTCGAGCCTACTCTCT
dot-bracket secondary structure
((.((((.(((((.(.((.((((.(((((.(((((((((.((((((........(((.((.......)).))).......)))))).))))))))).)))
)).)))).)).)))))).))))))
SIMILARITIES| miRBase pta-MIR398: 3e-66 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: pta-MIR398 from miRBase (MNEST039427) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
