ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR408
source: PMRD, original name: pta-miR408
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCACTGCCTCTTCCCTGGC miRNA* CAGGGACGAGTTAGGGCATGG mismatches: 4 bulges: 0 |
pre-miRNA
CGAGACAGGGACGAGTTAGGGCATGGGAGTTGCATATGCAGAAACGTCTGCTTCTGCCATTCTTATGCACTGCCTCTTCCCTGGCTC
dot-bracket secondary structure
)(((.((((((.(((.(((.((((((((((.(((...(((((....)))))...))).)))))))))).))).))).)))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
CGAGACAGGGACGAGTTAGGGCATGGGAGTTGCATATGCAGAAACGTCTGCTTCTGCCATTCTTATGCACTGCCTCTTCCCTGGCTC
dot-bracket secondary structure
)(((.((((((.(((.(((.((((((((((.(((...(((((....)))))...))).)))))))))).))).))).)))))).)))
SIMILARITIES| miRBase pta-MIR408: 1.0E-43 PMRD vvi-miR408: 4.0E-6 microPC miR408: 2.0E-5 | UniProt no hits RFAM 8MIR408: 7.0E-5 |
Identical with: pta-MIR408 from miRBase (MNEST039428) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
