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ABOUT THIS RECORD

ID: MNEST051567
species: Pinus taeda
miRNA family: MIR482
source: PMRD, original name: pta-miR482a

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTCCCTACTCCTCCCATTCC

miRNA*
TGTGGAAGGATAGGGTAAGACT

mismatches: 2
bulges: 2

View larger
pre-miRNA
GAGGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATTCCTT

dot-bracket secondary structure
((((.((((.(((((((((.((((((..((....((((((...............))))))...))))))))))))).)))).)))).))))


SIMILARITIES
miRBase pta-MIR482a: 3e-47

PMRD pta-miR482d: 7e-45

microPC miR482: 2e-42
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




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