ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR482
source: PMRD, original name: pta-miR482b
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTACTCCTCCCATTCC miRNA* TGTGGAAGGATAGGGTAAGACT mismatches: 2 bulges: 2 |
pre-miRNA
TGAGGTGTGGAAGGATAGGGTAAGACTAGGGTTAAGCAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATTCCTT
dot-bracket secondary structure
)((((.((((.(((((((((.((((((.((((.((((((.....))))))............)))).))))))))))).)))).)))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
TGAGGTGTGGAAGGATAGGGTAAGACTAGGGTTAAGCAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATTCCTT
dot-bracket secondary structure
)((((.((((.(((((((((.((((((.((((.((((((.....))))))............)))).))))))))))).)))).)))).))))
SIMILARITIES| miRBase pta-MIR482b: 3.0E-47 PMRD pta-miR482a: 2.0E-42 microPC miR482: 7.0E-45 | UniProt no hits RFAM no hits |
Identical with: miR482 from microPC (MNEST045021), pta-MIR482b from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
