ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR482
source: PMRD, original name: pta-miR482d
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTCCCTACTCCTCCCATT miRNA* TGGAAGGATAGGGTAAGACT mismatches: 4 bulges: 2 |
pre-miRNA
TGAGGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCCTCCCTACTCCTCCCATTCCTT
dot-bracket secondary structure
)((((.((((.(((((((((...((((..((....((((((...............))))))...))))))..))))).)))).)))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
TGAGGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCCTCCCTACTCCTCCCATTCCTT
dot-bracket secondary structure
)((((.((((.(((((((((...((((..((....((((((...............))))))...))))))..))))).)))).)))).))))
SIMILARITIES| miRBase pta-MIR482d: 3.0E-47 PMRD pta-miR482a: 7.0E-45 microPC miR482: 7.0E-45 | UniProt no hits RFAM no hits |
Identical with: miR482 from microPC (MNEST044825), pta-MIR482d from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
