ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR948
source: PMRD, original name: pta-miR948
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGCTGTGTGGGATCCGG miRNA* GGATCCTACAAACCCTGTTT mismatches: 4 bulges: 0 |
pre-miRNA
AAGTCATGAAATCAGGCTGTGTGGGATCCGGTAACGCCACAGAGTAAGATAGCAGCGTCAAAGTGACTGTAGGCATTGGTGGATAAAGTGAAGCGGTATT
GATGAGGCCTCACATTGTCCACCGATGCCTACAGCCACTTTGACGTTCTCATCTGATTTTATGACGGCCTCACTTCCTCCGCCAATGCCTGAGGCGGTGT
CATCTGTTTTTGCGGCATTACCGGATCCTACAAACCCTGTTTTCATGGGTT
dot-bracket secondary structure
((.((((((((.((((...(((((((((((((((.(((.((((...((((((.((((((((((((.((((((((((((((((((((.((((.((..((..
..))..)).)))).)))))))))))))))))))).)))))))))))))).))))........(((((...((((.((((.((....))..)))).)))).
...))))))))).))).)))))))))))))))...)))).)))))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
AAGTCATGAAATCAGGCTGTGTGGGATCCGGTAACGCCACAGAGTAAGATAGCAGCGTCAAAGTGACTGTAGGCATTGGTGGATAAAGTGAAGCGGTATT
GATGAGGCCTCACATTGTCCACCGATGCCTACAGCCACTTTGACGTTCTCATCTGATTTTATGACGGCCTCACTTCCTCCGCCAATGCCTGAGGCGGTGT
CATCTGTTTTTGCGGCATTACCGGATCCTACAAACCCTGTTTTCATGGGTT
dot-bracket secondary structure
((.((((((((.((((...(((((((((((((((.(((.((((...((((((.((((((((((((.((((((((((((((((((((.((((.((..((..
..))..)).)))).)))))))))))))))))))).)))))))))))))).))))........(((((...((((.((((.((....))..)))).)))).
...))))))))).))).)))))))))))))))...)))).)))))))).))
SIMILARITIES| miRBase pta-MIR948: 1e-141 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
