ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR949
source: PMRD, original name: pta-miR949
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCCGGGAATCCAATGCGCC miRNA* TGTATTGATTTCCGGGGAAG mismatches: 0 bulges: 1 |
pre-miRNA
AGAGCCTCTCCGGGAATCCAATGCGCCTTCCTCTTGAACGCCTTTCAACGCGCGTGCTGTGCGTGAAAACGCGTTTAGGAGGAAGGTGTATTGATTTCCG
GGGAAGCCCT
dot-bracket secondary structure
((.((.((((((((((((.((((((((((((((((((((((.(((((.(((((.....))))))))))..))))))))))))))))))))))))))))))
)))).)).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
AGAGCCTCTCCGGGAATCCAATGCGCCTTCCTCTTGAACGCCTTTCAACGCGCGTGCTGTGCGTGAAAACGCGTTTAGGAGGAAGGTGTATTGATTTCCG
GGGAAGCCCT
dot-bracket secondary structure
((.((.((((((((((((.((((((((((((((((((((((.(((((.(((((.....))))))))))..))))))))))))))))))))))))))))))
)))).)).))
SIMILARITIES| miRBase pta-MIR949: 6e-58 PMRD no hits microPC miR949: 9e-51 | UniProt no hits RFAM no hits |
Identical with: miR949 from microPC (MNEST045449) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
