ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR1313
source: PMRD, original name: pta-miR1313
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCACTGAAATTATTGTTCG miRNA* AACAATAATTTCAGTGGAAGA mismatches: 3 bulges: 0 |
pre-miRNA
ATGGTATTCTACCACTGAAATTATTGTTCGAAATAACACCTGCAATTCATGGATGTATACTGCCGTGGTATGGTATCCTACAGTGTATCCCCAGTCTAAC
CTAGTTGCAGGGTTGCAACACATGGCATGGTGGGGGATCTACTGGGCAATAACCAAGTTGCATGGGTGTATTTATCCAACAATAATTTCAGTGGAAGACT
TCCATCGAT
dot-bracket secondary structure
((((...(((.(((((((((((((((((..(((((.(((((((((((..(((.(((....((((..((........))..(((((.((((((..((...(
(..(((((......)))))....))...))..)))))).)))))))))))).)))))))))..))))))))))....))))))))))))))))).)))..
.))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
ATGGTATTCTACCACTGAAATTATTGTTCGAAATAACACCTGCAATTCATGGATGTATACTGCCGTGGTATGGTATCCTACAGTGTATCCCCAGTCTAAC
CTAGTTGCAGGGTTGCAACACATGGCATGGTGGGGGATCTACTGGGCAATAACCAAGTTGCATGGGTGTATTTATCCAACAATAATTTCAGTGGAAGACT
TCCATCGAT
dot-bracket secondary structure
((((...(((.(((((((((((((((((..(((((.(((((((((((..(((.(((....((((..((........))..(((((.((((((..((...(
(..(((((......)))))....))...))..)))))).)))))))))))).)))))))))..))))))))))....))))))))))))))))).)))..
.))))....
SIMILARITIES| miRBase pta-MIR1313: 1e-116 PMRD no hits microPC miR1313: 2e-65 | UniProt no hits RFAM no hits |
Identical with: pta-MIR1313 from miRBase (MNEST039448) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
