ABOUT THIS RECORDspecies: Pinus taeda
source: PMRD, original name: pta-miR1315
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCCTGTCAGGTTCCCA miRNA* GAGGCCCGTCAGGTTCCCAAC mismatches: 6 bulges: 0 |
pre-miRNA
GTCAAGGATTTGGAGGCCCGTCAGGTTCCCAACCGAGTCCGGGACCATCTGCAGACTGGAGCACCAGCCCAGGACAAGGCTTTGGAGGCCGGTCAGGTTC
CCAACCGAGTCCGGGACCATCTGCAGACTGGAGCACTCTTCCAGGTCAAGGATTTGGAGGCCTGTCAGGTTCCCAACCGAGTCCGGGACTAT
dot-bracket secondary structure
(((..((((((((..(((.(.(((((..((((....((((..((((.((((((((((((....))))(((.((((..((..((((..(((.....)))..
))))))..)))))))....))))))))..((((.....)))).))))..))))))))..))))).).)))..))))....))))..)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
GTCAAGGATTTGGAGGCCCGTCAGGTTCCCAACCGAGTCCGGGACCATCTGCAGACTGGAGCACCAGCCCAGGACAAGGCTTTGGAGGCCGGTCAGGTTC
CCAACCGAGTCCGGGACCATCTGCAGACTGGAGCACTCTTCCAGGTCAAGGATTTGGAGGCCTGTCAGGTTCCCAACCGAGTCCGGGACTAT
dot-bracket secondary structure
(((..((((((((..(((.(.(((((..((((....((((..((((.((((((((((((....))))(((.((((..((..((((..(((.....)))..
))))))..)))))))....))))))))..((((.....)))).))))..))))))))..))))).).)))..))))....))))..)))...
SIMILARITIES| miRBase pta-MIR1315: 1e-106 PMRD no hits microPC no hits | UniProt sp|B0W6M9|SUR8_CULQU: 0.00001 RFAM no hits |
Identical with: pta-MIR1315 from miRBase (MNEST039450) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
