ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR1316
source: PMRD, original name: pta-miR1316
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCATACACAAACCATTGGAA miRNA* GCAATGAAGGTGTAAAAG mismatches: 7 bulges: 3 |
pre-miRNA
GGCAGATCCAGAATAAGAACAAATTGGGCAATGAAGGTGTAAAAGAAAAGATCTTCCATACACAAACCATTGGAATCCTTCTTATTCTGCAATTGGATTG
GGCAATGAA
dot-bracket secondary structure
.((.(((((((((((((((......((((((((...(((((.((((.....))))...)))))....)))))...))))))))))))......)))))).
.))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
GGCAGATCCAGAATAAGAACAAATTGGGCAATGAAGGTGTAAAAGAAAAGATCTTCCATACACAAACCATTGGAATCCTTCTTATTCTGCAATTGGATTG
GGCAATGAA
dot-bracket secondary structure
.((.(((((((((((((((......((((((((...(((((.((((.....))))...)))))....)))))...))))))))))))......)))))).
.))......
SIMILARITIES| miRBase pta-MIR1316: 3e-57 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: pta-MIR1316 from miRBase (MNEST039451) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
