ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR156
source: PMRD, original name: ptc-miR156k
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGGGAGCAC miRNA* GCTTTCTCTTCTTCTGTCACC mismatches: 2 bulges: 1 |
pre-miRNA
ATTATGCATGCTGACAGAAGAGAGGGAGCACAACCCTGTAATAGCTAAAGAGAGTCTTTGCTTTTGTTGGACTGTGCTTTCTCTTCTTCTGTCACCAACCA
A
dot-bracket secondary structure
).......((.(((((((((((((..((((((..((..(((.(((.((((.....))))))).)))..))..))))))..))).)))))))))).))....
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
ATTATGCATGCTGACAGAAGAGAGGGAGCACAACCCTGTAATAGCTAAAGAGAGTCTTTGCTTTTGTTGGACTGTGCTTTCTCTTCTTCTGTCACCAACCA
A
dot-bracket secondary structure
).......((.(((((((((((((..((((((..((..(((.(((.((((.....))))))).)))..))..))))))..))).)))))))))).))....
.
SIMILARITIES| miRBase ptc-MIR156k: 1.0E-52 PMRD lja-miR157b: 3.0E-16 microPC miR156: 3.0E-10 | UniProt no hits RFAM 6mir-156: 1.0E-6 |
Identical with: ptc-MIR156k from miRBase (MNEST041298) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
