ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR159
source: PMRD, original name: ptc-miR159d
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGGGAGCTCCT miRNA* GAGCTTTCTTTGGTTCAAAAT mismatches: 5 bulges: 0 |
pre-miRNA
CTTGTAAATTTGGGAGCTTTCTTTGGTTCAAAATGAGGAAAGAAAGTGGGTATACTCGTCTGCTTGTTCATGGATACCTCTGGGTTGCGCAGGATATATTA
GTTAGGGCTACAGCTTAAGGGTTTGCATGGCCAAGGAGACGTTGCCTGCCTTCTCCTTTCGTTTCTTGGATTGAAGGGAGCTCCTACATGTATC
dot-bracket secondary structure
).........((((((((..(((..(((((((((((((..((((.(..((((....(((((.((((..((((.(.(((..(((((((.((..(((......
)))...))..)))))))..))).).))))..)))).))))).))))..).))))..)))))))..))))))..)))..))))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
CTTGTAAATTTGGGAGCTTTCTTTGGTTCAAAATGAGGAAAGAAAGTGGGTATACTCGTCTGCTTGTTCATGGATACCTCTGGGTTGCGCAGGATATATTA
GTTAGGGCTACAGCTTAAGGGTTTGCATGGCCAAGGAGACGTTGCCTGCCTTCTCCTTTCGTTTCTTGGATTGAAGGGAGCTCCTACATGTATC
dot-bracket secondary structure
).........((((((((..(((..(((((((((((((..((((.(..((((....(((((.((((..((((.(.(((..(((((((.((..(((......
)))...))..)))))))..))).).))))..)))).))))).))))..).))))..)))))))..))))))..)))..))))))))........
SIMILARITIES| miRBase ptc-MIR159d: 9.0E-108 PMRD pta-miR319: 1.0E-5 microPC miR319: 1.0E-5 | UniProt no hits RFAM 9MIR159: 2.0E-106 |
Identical with: ptc-MIR159d from miRBase (MNEST041302) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
