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ABOUT THIS RECORD

ID: MNEST051605
species: Populus trichocarpa
miRNA family: MIR159
source: PMRD, original name: ptc-miR159d

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTGGATTGAAGGGAGCTCCT

miRNA*
GAGCTTTCTTTGGTTCAAAAT

mismatches: 5
bulges: 0

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pre-miRNA
TTGTAAATTTGGGAGCTTTCTTTGGTTCAAAATGAGGAAAGAAAGTGGGTATACTCGTCTGCTTGTTCATGGATACCTCTGGGTTGCGCAGGATATATTA
GTTAGGGCTACAGCTTAAGGGTTTGCATGGCCAAGGAGACGTTGCCTGCCTTCTCCTTTCGTTTCTTGGATTGAAGGGAGCTCCTACATGTATC


dot-bracket secondary structure
.........((((((((..(((..(((((((((((((..((((.(..((((....(((((.((((..((((.(.(((..(((((((.((..(((......
)))...))..)))))))..))).).))))..)))).))))).))))..).))))..)))))))..))))))..)))..))))))))........



SIMILARITIES
miRBase ptc-MIR159d: 9e-108

PMRD pta-miR319: 0.00001

microPC miR319: 0.00001
UniProt no hits

RFAM MIR159: 2e-106

Identical with: ptc-MIR159d from miRBase (MNEST041302)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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