ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR159
source: PMRD, original name: ptc-miR159e
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGGGTGAAGGGAGCTCCT miRNA* GAGCTTGCTCACTCCAGATC mismatches: 2 bulges: 1 |
pre-miRNA
AACCATTAAATAGGAGCTTGCTCACTCCAGATCTGAAAGGAGGTGATAGGAAACCACTTCTGCTACTTCATGAATACCCGTGGGTGTGCGCGTAGCCATGG
TGAGCTGCGCAGGCTAAGGGTCTGCATGTGCTAGGAGATGTGGTTGCCTTGATCTTTTTGGTCTTGGGGTGAAGGGAGCTCCTATAGTCCCA
dot-bracket secondary structure
)........((((((((((.((((((((((..(..((((((......(((.((((((.(((.(((...((((...((((...(((.(((((((.((....)
)..)).))))).)))..))))...))))...))).))).)))))).)))...))))))..)..)))))))).)).)))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
AACCATTAAATAGGAGCTTGCTCACTCCAGATCTGAAAGGAGGTGATAGGAAACCACTTCTGCTACTTCATGAATACCCGTGGGTGTGCGCGTAGCCATGG
TGAGCTGCGCAGGCTAAGGGTCTGCATGTGCTAGGAGATGTGGTTGCCTTGATCTTTTTGGTCTTGGGGTGAAGGGAGCTCCTATAGTCCCA
dot-bracket secondary structure
)........((((((((((.((((((((((..(..((((((......(((.((((((.(((.(((...((((...((((...(((.(((((((.((....)
)..)).))))).)))..))))...))))...))).))).)))))).)))...))))))..)..)))))))).)).)))))))))).......
SIMILARITIES| miRBase ptc-MIR159e: 1.0E-106 PMRD ptc-miR159f: 2.0E-13 microPC miR319: 6.0E-7 | UniProt no hits RFAM 9MIR159: 3.0E-105 |
Identical with: ptc-MIR159e from miRBase (MNEST041303) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
