miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST051627
species: Populus trichocarpa
miRNA family: MIR166
source: PMRD, original name: ptc-miR166c

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGTTGTCTGGCTCGAGG

mismatches: 4
bulges: 0

View larger
pre-miRNA
CTTTTTTTGAGGGGAATGTTGTCTGGCTCGAGGACTCTTTCTTGATCAGTCTGATCAAGTGTTCTATCTTTAGATCTAATATCTTAGATCATGTGTTAGG
GTCGTCGGACCAGGCTTCATTCCCCCCAATTATT


dot-bracket secondary structure
......(((.((((((((..((((((..(((.((((((..(((((((.....))))))).............(((((((....))))))).......)))
))).)))..))))))..)))))))).))).....



SIMILARITIES
miRBase ptc-MIR166c: 2e-67

PMRD ptc-miRf10467-akr: 2e-64

microPC miR166: 0.0000000004
UniProt no hits

RFAM mir-166: 1e-63

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




Liczniki na strone;