ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR166
source: PMRD, original name: ptc-miR166l
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* TGAATGTTGTCTGGTTCAAGG mismatches: 4 bulges: 0 |
pre-miRNA
TAACTTTTGTGGTGAATGTTGTCTGGTTCAAGGCATGGCCACCACATCTCTTGGTGAATATATGTCCTCGGACCAGGCTTCATTCCCCTCAATTAAT
dot-bracket secondary structure
......(((.((.(((((..(((((((((.(((((((..(((((.......)))))....)))).))).)))))))))..))))).)).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
TAACTTTTGTGGTGAATGTTGTCTGGTTCAAGGCATGGCCACCACATCTCTTGGTGAATATATGTCCTCGGACCAGGCTTCATTCCCCTCAATTAAT
dot-bracket secondary structure
......(((.((.(((((..(((((((((.(((((((..(((((.......)))))....)))).))).)))))))))..))))).)).))).....
SIMILARITIES| miRBase ptc-MIR166l: 3e-50 PMRD ptc-miR166i: 0.000000000000005 microPC miR166: 0.000005 | UniProt no hits RFAM mir-166: 1e-43 |
Identical with: ptc-MIR166l from miRBase (MNEST041333) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
