ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR166
source: PMRD, original name: ptc-miR166q
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTT miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
TTAGGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATTGAGGCCATGATTATACAGACATGGCATTACCTGATGACAGCCGAGAAAATTCAAAGTCTGTGT
GTATCTTGTACCTCGATGATTCTCGGACCAGGCTTCATTCCTTCCAACAAA
dot-bracket secondary structure
....((((..(((((((..((((((..((((((((((((((.((.((((((((((((..(((..............)))..((....))...))))))))
).))).))..))))))))).)))))..))))))..)))))))..))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
TTAGGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATTGAGGCCATGATTATACAGACATGGCATTACCTGATGACAGCCGAGAAAATTCAAAGTCTGTGT
GTATCTTGTACCTCGATGATTCTCGGACCAGGCTTCATTCCTTCCAACAAA
dot-bracket secondary structure
....((((..(((((((..((((((..((((((((((((((.((.((((((((((((..(((..............)))..((....))...))))))))
).))).))..))))))))).)))))..))))))..)))))))..))))...
SIMILARITIES| miRBase ptc-MIR166q: 3e-82 PMRD ptc-miRf10514-akr: 5e-78 microPC miR166: 0.0000001 | UniProt no hits RFAM mir-166: 8e-77 |
Identical with: ptc-MIR166q from miRBase (MNEST041338) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
