ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR167
source: PMRD, original name: ptc-miR167a
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTGGTGGTTTCACC mismatches: 2 bulges: 1 |
pre-miRNA
CACTAGCAGTTGAAGCTGCCAGCATGATCTAACTTCCTTGCTTCTTTATCAAGGATGGATTTAGATCATGTGGTGGTTTCACCTGTTGA
dot-bracket secondary structure
...((((((.((((((..(((.((((((((((((((((((.........)))))).))..)))))))))))))..)))))).)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
CACTAGCAGTTGAAGCTGCCAGCATGATCTAACTTCCTTGCTTCTTTATCAAGGATGGATTTAGATCATGTGGTGGTTTCACCTGTTGA
dot-bracket secondary structure
...((((((.((((((..(((.((((((((((((((((((.........)))))).))..)))))))))))))..)))))).)))))).
SIMILARITIES| miRBase ptc-MIR167a: 2e-45 PMRD ptc-miR167c: 3e-22 microPC miR167: 0.00002 | UniProt no hits RFAM MIR167_1: 3e-44 |
Identical with: ptc-MIR167a from miRBase (MNEST041339) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
