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ABOUT THIS RECORD

ID: MNEST051642
species: Populus trichocarpa
miRNA family: MIR167
source: PMRD, original name: ptc-miR167a

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTA

miRNA*
GATCATGTGGTGGTTTCACC

mismatches: 2
bulges: 1

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pre-miRNA
CACTAGCAGTTGAAGCTGCCAGCATGATCTAACTTCCTTGCTTCTTTATCAAGGATGGATTTAGATCATGTGGTGGTTTCACCTGTTGA

dot-bracket secondary structure
...((((((.((((((..(((.((((((((((((((((((.........)))))).))..)))))))))))))..)))))).)))))).


SIMILARITIES
miRBase ptc-MIR167a: 2e-45

PMRD ptc-miR167c: 3e-22

microPC miR167: 0.00002
UniProt no hits

RFAM MIR167_1: 3e-44

Identical with: ptc-MIR167a from miRBase (MNEST041339)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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